PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3183_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 584aa    MW: 64845.3 Da    PI: 8.3518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3183_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-11152176226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C ++++t tCk+Gd+CkF H+
  Neem_3183_f_1 152 GEKDCAHYMQTRTCKFGDSCKFDHP 176
                    7889********************9 PP

2zf-CCCH33.95.3e-11202228127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C++f++t  Ck+G +CkF+H++
  Neem_3183_f_1 202 PGEPDCPYFLKTKKCKFGLKCKFNHPK 228
                    5789*********************96 PP

3zf-CCCH36.58.4e-12251275327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C f++++G+Ck+G++CkF+H++
  Neem_3183_f_1 251 EPPCAFYLKNGICKFGATCKFHHPK 275
                    79*********************96 PP

4zf-CCCH38.12.5e-12329354126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ++++ C+f+++tG CkyG++C+++H+
  Neem_3183_f_1 329 PGEVDCPFYLKTGSCKYGSTCRYNHP 354
                    57899********************9 PP

5zf-CCCH413.3e-13417438526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+++++tG CkyG+rCkF+H+
  Neem_3183_f_1 417 ECDYYMKTGVCKYGERCKFHHP 438
                    7********************9 PP

6zf-CCCH34.92.6e-11538558626
                    -SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                    C+++++tG CkyG++CkF H+
  Neem_3183_f_1 538 CPYYMKTGSCKYGSTCKFDHP 558
                    ********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.779150178IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5151177IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4156175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737201229IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4201228IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8203228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5206231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4207228IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572248276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5251275IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9251275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4253274IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7328355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676328356IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10330354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5332355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4334353IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-7412439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037412440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7413440IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10417438IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6418438IPR000571Zinc finger, CCCH-type
SMARTSM003560.012535559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6536559IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455537560IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9538558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5538557IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAKQLYGYSS TYGASGAGGG SGTPTSSATA ALSSVYTSRS LADPHHLSDS ALRYDPDHSK  60
YSSSSIYDTL RYSGTATSPY LSSQQPWPPG VDPTDHLTAG IKRHSEALYH PTVLGTHATI  120
GQSEAWYSTN SLAKRPRFES ASYFHLYPQR PGEKDCAHYM QTRTCKFGDS CKFDHPLWVP  180
EGGIPDWKEV PLIASEWLPE RPGEPDCPYF LKTKKCKFGL KCKFNHPKDK LIALSDSGNA  240
DVSTLPERPS EPPCAFYLKN GICKFGATCK FHHPKDIQIS SGGQENGSSK QNELLFKTEE  300
TTGLLNSVMP HVPYIPAMLH NSKGLPIRPG EVDCPFYLKT GSCKYGSTCR YNHPDRNAIN  360
PPASAIGHHF ITSHAASLSL GIVNPAASMY QTIDPRLAQS ALGVSPTFYP QRPGQMECDY  420
YMKTGVCKYG ERCKFHHPLD LSTAKQASQE TVKLTLAGLP RRELCMNSFY VHLSYFHKEV  480
KNSTQMNSHL GIFRFRHLVS RLYVIYICVL IYMGGTWEWK HRRYFLSLTL HVEGALHCPY  540
YMKTGSCKYG STCKFDHPTP GEVLAKTGSQ GTSTEGDEKE AETD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493722.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-168C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067F2C40.0A0A067F2C4_CITSI; Uncharacterized protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-157floral homeotic protein (HUA1)